A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

H

H - Static variable in class conformation.Dssp

HBAR - Variable in class core.SimSystem

Planck's constant @f$\hbar @f$.

HBondFormatter - class io.g96.out.HBondFormatter.

HBondFormatter() - Constructor for class io.g96.out.HBondFormatter

Helix - Variable in class conformation.Dssp

HydrogenBonds - class conformation.HydrogenBonds.

HydrogenBonds() - Constructor for class conformation.HydrogenBonds

HydrogenBonds.HBDefinitions - class conformation.HydrogenBonds.HBDefinitions.

HydrogenBonds.HBDefinitions() - Constructor for class conformation.HydrogenBonds.HBDefinitions

Default Constructor

HydrogenBonds.HBDefinitions(int) - Constructor for class conformation.HydrogenBonds.HBDefinitions

If you already know how many hydrogen bonds you want to look at, use this.

HydrogenBonds.HBDefinitions(int[], int[], int[]) - Constructor for class conformation.HydrogenBonds.HBDefinitions

If you already know which hydrogen bonds you want to look at, use this.

HydrogenBonds.HBDefinitions(int[], int[], Bonds) - Constructor for class conformation.HydrogenBonds.HBDefinitions

If you just want to look at any hydrogen bond between any two members of sets of hydrogens and acceptors, use this.

HydrogenBonds.HBFrameStats - class conformation.HydrogenBonds.HBFrameStats.

HydrogenBonds.HBFrameStats(int) - Constructor for class conformation.HydrogenBonds.HBFrameStats

HydrogenBonds.HBTrajectoryStats - class conformation.HydrogenBonds.HBTrajectoryStats.

HydrogenBonds.HBTrajectoryStats(int) - Constructor for class conformation.HydrogenBonds.HBTrajectoryStats

havephi - Variable in class energy.FDPoissonBoltzmann

hb7true - Variable in class conformation.DsspTest

hbCreateDecodeTables(int[], int[], int[], char[], int, int, int) - Method in class contrib.CBZip2InputStream

hbEnergy(int, int, double[][][]) - Static method in class conformation.Dssp

The Kabsch-Sander "energy" of a hydrogen bond.

hbFormat - Static variable in class io.g96.out.HBondFormatter

heapsort(double[], int, int[]) - Static method in class esraMath.BLA

helpText - Variable in class io.args.ArgumentParser

hydrogens - Variable in class conformation.HydrogenBonds.HBDefinitions