A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

E

Energy - class energy.Energy.

Energy() - Constructor for class energy.Energy

The Energy class default constructor.

Energy(Particles, SimSystem) - Constructor for class energy.Energy

The Energy class constructor.

Energy_Angle - class energy.Energy_Angle.

Energy_Angle(Particles, SimSystem) - Constructor for class energy.Energy_Angle

The Energy_Angle class constructor.

Energy_Bond - class energy.Energy_Bond.

Energy_Bond(Particles, SimSystem) - Constructor for class energy.Energy_Bond

The Energy_Bond class constructor.

Energy_Dihedral - class energy.Energy_Dihedral.

Energy_Dihedral(Particles, SimSystem) - Constructor for class energy.Energy_Dihedral

The Energy_Dihedral class constructor.

Energy_GBorn - class energy.Energy_GBorn.

Energy_GBorn(Particles, SimSystem) - Constructor for class energy.Energy_GBorn

Energy_GBorn(Particles, SimSystem, Bornradii_STILL, double) - Constructor for class energy.Energy_GBorn

Energy_ImpDihedral - class energy.Energy_ImpDihedral.

Energy_ImpDihedral(Particles, SimSystem) - Constructor for class energy.Energy_ImpDihedral

The Energy_ImpDihedral class constructor.

eFormatDigits(double, char) - Method in class contrib.PrintfFormat.ConversionSpecification

For e format, the flag character '-', means that the output should be left justified within the field.

eFormatString(double, char) - Method in class contrib.PrintfFormat.ConversionSpecification

An intermediate routine on the way to creating an e format String.

emptyDefault - Static variable in class io.args.ArgumentTypeSpec

end - Static variable in class io.g96.out.HBondFormatter

end() - Method in class io.g96.out.OutTopoG96

endBlock() - Method in class contrib.CBZip2InputStream

endPattern - Variable in class io.g96.in.InBlock

ener - Variable in class io.g96.in.InEnergiesG96.G96Energies

various energies.

enerGr - Variable in class io.g96.in.InEnergiesG96.G96Energies

energies between energy groups

eneres - Variable in class io.g96.in.InEnergiesG96.G96Energies

restraint energies

energy - package energy

energyCutoff - Static variable in class conformation.Dssp

kabsch & sander hydrogen bond energy parameters

epsCgrid - Variable in class energy.FDPoissonBoltzmann

epsCgrid[GPX*GPY*GPZ] stores the sum of the permittivities at the six faces plus @f$\varepsilon _{Solvent} \kappa ^2 h^2 @f$ times the number of solvent faces divided by six.

epsIgrid - Variable in class energy.FDPoissonBoltzmann

epsIgrid[GPX*GPY*GPZ] stores the permittivity surrounding each face of a gridpoint[I][J][K] shifted in direction I

epsJgrid - Variable in class energy.FDPoissonBoltzmann

epsJgrid[GPX*GPY*GPZ] stores the permittivity surrounding each face of a gridpoint[I][J][K] shifted in direction J

epsKgrid - Variable in class energy.FDPoissonBoltzmann

epsKgrid[GPX*GPY*GPZ] stores the permittivity surrounding each face of a gridpoint[I][J][K] shifted in direction K

epsilon - Variable in class energy.Energy_GBorn

epssolute - Static variable in class energy.FDPoissonBoltzmann

solute permittivity

epssolute - Variable in class energy.FDPoissonBoltzmann_Parameters

epssolvent - Static variable in class energy.FDPoissonBoltzmann

solvent permittivity

epssolvent - Variable in class energy.FDPoissonBoltzmannTest

epssolvent - Variable in class energy.FDPoissonBoltzmann_Parameters

esraMath - package esraMath

exclusionmap - Variable in class core.SimSystem

HashMap for Exclusions.