energy
Class Energy_Dihedral

java.lang.Object
  energy.Energy
      energy.Energy_Dihedral

All Implemented Interfaces:

InteractionsEnergy, java.lang.Runnable

public class Energy_Dihedral

extends Energy

implements java.lang.Runnable, InteractionsEnergy

Field Summary

private Dihedrals	dih
private Dihedrals	dihh
private double	vdih

Fields inherited from class energy.Energy

atoms, DIM, interactionsEnergy, size, sys

Constructor Summary

Energy_Dihedral(Particles atoms, SimSystem sys)
The Energy_Dihedral class constructor.

Method Summary

(package private) double	Calc_COSPHI(double cosphi, int m)
protected double	calc(Dihedrals dihedrals) protected void Method calc evaluates the dihedral force as (GROMOS96 manual pages II-25ff):
void	run() public void Method run calls protected void Method calc.

Methods inherited from class energy.Energy

calcEnergy

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

dihh

private final Dihedrals dihh

dih

private final Dihedrals dih

vdih

private double vdih

Constructor Detail

Energy_Dihedral

public Energy_Dihedral(Particles atoms,
                       SimSystem sys)

The Energy_Dihedral class constructor.

Method Detail

run

public void run()

public void Method run calls protected void Method calc. It also serves as the interface for the thread start.

Specified by:

run in interface java.lang.Runnable

calc

protected double calc(Dihedrals dihedrals)

protected void Method calc evaluates the dihedral force as (GROMOS96 manual pages II-25ff):

Calc_COSPHI

final double Calc_COSPHI(double cosphi,
                         int m)