conformation
Class HydrogenBonds.HBDefinitions

java.lang.Object
  conformation.HydrogenBonds.HBDefinitions

Enclosing class:

HydrogenBonds

public class HydrogenBonds.HBDefinitions

extends java.lang.Object

Field Summary

int[]	acceptors
int[]	donors
int[]	hydrogens
int	size

Constructor Summary

HydrogenBonds.HBDefinitions()
Default Constructor

HydrogenBonds.HBDefinitions(int size)
If you already know how many hydrogen bonds you want to look at, use this.

HydrogenBonds.HBDefinitions(int[] anyHydrogen, int[] anyAcceptor, Bonds bondh)
If you just want to look at any hydrogen bond between any two members of sets of hydrogens and acceptors, use this.

HydrogenBonds.HBDefinitions(int[] donors, int[] hydrogens, int[] acceptors)
If you already know which hydrogen bonds you want to look at, use this.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

donors

public int[] donors

hydrogens

public int[] hydrogens

acceptors

public int[] acceptors

size

public int size

Constructor Detail

HydrogenBonds.HBDefinitions

public HydrogenBonds.HBDefinitions()

Default Constructor

HydrogenBonds.HBDefinitions

public HydrogenBonds.HBDefinitions(int size)

If you already know how many hydrogen bonds you want to look at, use this.

Parameters:

size -

HydrogenBonds.HBDefinitions

public HydrogenBonds.HBDefinitions(int[] donors,
                                   int[] hydrogens,
                                   int[] acceptors)

If you already know which hydrogen bonds you want to look at, use this.

Parameters:

donors -

hydrogens -

acceptors -

HydrogenBonds.HBDefinitions

public HydrogenBonds.HBDefinitions(int[] anyHydrogen,
                                   int[] anyAcceptor,
                                   Bonds bondh)

If you just want to look at any hydrogen bond between any two members of sets of hydrogens and acceptors, use this.

Parameters:

anyHydrogen -

anyAcceptor -

bondh -